SNX5

Protein-coding gene in the species Homo sapiens

SNX5

Available structures

PDB

Ortholog search: PDBe RCSB

List of PDB id codes
1SYS

Identifiers

Aliases

SNX5, sorting nexin 5

External IDs

OMIM: 605937; MGI: 1916428; HomoloGene: 40944; GeneCards: SNX5; OMA:SNX5 - orthologs

Gene location (Human)

Chr.	Chromosome 20 (human)^[1]

Band	20p11.23	Start	17,941,597 bp^[1]
Band	20p11.23	End	17,968,980 bp^[1]

Gene location (Mouse)

Chr.	Chromosome 2 (mouse)^[2]

Band	2 G1\|2 70.98 cM	Start	144,092,043 bp^[2]
Band	2 G1\|2 70.98 cM	End	144,112,826 bp^[2]

RNA expression pattern

Bgee

Human

Mouse (ortholog)

Top expressed in

left lobe of thyroid gland

right lobe of thyroid gland

Achilles tendon

rectum

spleen

corpus epididymis

secondary oocyte

lymph node

kidney

monocyte

Top expressed in

abdominal wall

dermis

maxillary prominence

somite

endocardial cushion

primitive streak

atrioventricular valve

cervix

spleen

morula

More reference expression data

BioGPS


More reference expression data

Gene ontology
Molecular function	dynactin binding protein binding phosphatidylinositol binding protein heterodimerization activity lipid binding cadherin binding phosphatidylinositol-5-phosphate binding D1 dopamine receptor binding phosphatidylinositol-4-phosphate binding phosphatidylinositol-3,5-bisphosphate binding
Cellular component	cytoplasm endosome cell projection early endosome membrane retromer, tubulation complex membrane ruffle extrinsic component of cytoplasmic side of plasma membrane plasma membrane extrinsic component of endosome membrane tubular endosome retromer complex early endosome phagocytic cup cytoplasmic vesicle membrane macropinocytic cup cytoplasmic vesicle cytosol brush border intracellular anatomical structure
Biological process	endocytosis vesicle organization retrograde transport, endosome to Golgi protein transport pinocytosis intracellular protein transport regulation of macroautophagy epidermal growth factor catabolic process positive regulation of renal sodium excretion negative regulation of blood pressure
Sources:Amigo / QuickGO

Orthologs

Species

Human

Mouse

Entrez


27131


69178

Ensembl


ENSG00000089006


ENSMUSG00000027423

UniProt


Q9Y5X3 Q5QPE4


Q9D8U8

RefSeq (mRNA)


NM_152227 NM_001282454 NM_014426


NM_001199188 NM_024225

RefSeq (protein)


NP_001269383 NP_055241 NP_689413


NP_001186117 NP_077187

Location (UCSC)

Chr 20: 17.94 – 17.97 Mb

Chr 2: 144.09 – 144.11 Mb

PubMed search

^[3]

^[4]

Wikidata

View/Edit Human

View/Edit Mouse

Sorting nexin-5 is a protein that in humans is encoded by the SNX5 gene.^[5]^[6]^[7]

This gene encodes a member of the sorting nexin family. Members of this family contain a phox (PX) domain, which is a phosphoinositide binding domain, and are involved in intracellular trafficking. This protein is a component of the mammalian retromer complex,^[6] which facilitates cargo retrieval from endosomes to the trans-Golgi network. It has also been shown to bind to the Fanconi anemia, complementation group A protein. This gene results in two transcript variants encoding the same protein.^[7]

Interactions

SNX5 has been shown to interact with FANCA.^[5]

References

^ ^a ^b ^c GRCh38: Ensembl release 89: ENSG00000089006 – Ensembl, May 2017
^ ^a ^b ^c GRCm38: Ensembl release 89: ENSMUSG00000027423 – Ensembl, May 2017
^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ ^a ^b Otsuki T; Kajigaya S; Ozawa K; Liu JM (Jan 2000). "SNX5, a new member of the sorting nexin family, binds to the Fanconi anemia complementation group A protein". Biochem Biophys Res Commun. 265 (3): 630–5. doi:10.1006/bbrc.1999.1731. PMID 10600472.
^ ^a ^b Wassmer T; Attar N; Bujny MV; Oakley J; Traer CJ; Cullen PJ (Dec 2006). "A loss-of-function screen reveals SNX5 and SNX6 as potential components of the mammalian retromer". J Cell Sci. 120 (Pt 1): 45–54. doi:10.1242/jcs.03302. PMID 17148574.
^ ^a ^b "Entrez Gene: SNX5 sorting nexin 5".

Maruyama K; Sugano S (1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID 8125298.
Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, et al. (1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID 9373149.
Teasdale RD, Loci D, Houghton F, et al. (2001). "A large family of endosome-localized proteins related to sorting nexin 1". Biochem. J. 358 (Pt 1): 7–16. doi:10.1042/0264-6021:3580007. PMC 1222026. PMID 11485546.
Deloukas P, Matthews LH, Ashurst J, et al. (2002). "The DNA sequence and comparative analysis of human chromosome 20". Nature. 414 (6866): 865–71. Bibcode:2001Natur.414..865D. doi:10.1038/414865a. PMID 11780052.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
Towler MC, Gleeson PA, Hoshino S, et al. (2005). "Clathrin Isoform CHC22, a Component of Neuromuscular and Myotendinous Junctions, Binds Sorting Nexin 5 and Has Increased Expression during Myogenesis and Muscle Regeneration". Mol. Biol. Cell. 15 (7): 3181–95. doi:10.1091/mbc.E04-03-0249. PMC 452575. PMID 15133132.
Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
Merino-Trigo A, Kerr MC, Houghton F, et al. (2005). "Sorting nexin 5 is localized to a subdomain of the early endosomes and is recruited to the plasma membrane following EGF stimulation". J. Cell Sci. 117 (Pt 26): 6413–24. doi:10.1242/jcs.01561. PMID 15561769. S2CID 39278533.
Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID 16189514. S2CID 4427026.