Protein-coding gene in the species Homo sapiens
NLRC5 |
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Available structures |
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PDB | Ortholog search: PDBe RCSB |
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Identifiers |
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Aliases | NLRC5, CLR16.1, NOD27, NOD4, NLR family, CARD domain containing 5, NLR family CARD domain containing 5 |
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External IDs | OMIM: 613537; MGI: 3612191; HomoloGene: 88935; GeneCards: NLRC5; OMA:NLRC5 - orthologs |
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Gene location (Human) |
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![Chromosome 16 (human)](//upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Ideogram_human_chromosome_16.svg/300px-Ideogram_human_chromosome_16.svg.png) | Chr. | Chromosome 16 (human)[1] |
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| Band | 16q13 | Start | 56,989,485 bp[1] |
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End | 57,083,531 bp[1] |
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Gene location (Mouse) |
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![Chromosome 8 (mouse)](//upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Ideogram_house_mouse_chromosome_8.svg/260px-Ideogram_house_mouse_chromosome_8.svg.png) | Chr. | Chromosome 8 (mouse)[2] |
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| Band | 8|8 C5 | Start | 95,160,984 bp[2] |
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End | 95,253,900 bp[2] |
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RNA expression pattern |
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Bgee | Human | Mouse (ortholog) |
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Top expressed in | - granulocyte
- spleen
- bone marrow cells
- blood
- appendix
- lymph node
- monocyte
- mucosa of ileum
- trabecular bone
- epithelium of nasopharynx
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| Top expressed in | - mesenteric lymph nodes
- subcutaneous adipose tissue
- blood
- spleen
- submandibular gland
- thymus
- Paneth cell
- lens
- white adipose tissue
- skin of abdomen
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| More reference expression data |
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BioGPS | |
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Gene ontology |
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Molecular function | - nucleotide binding
- protein binding
- ATP binding
- RNA polymerase II cis-regulatory region sequence-specific DNA binding
| Cellular component | - cytoplasm
- centrosome
- nucleus
- cytosol
| Biological process | - positive regulation of type I interferon-mediated signaling pathway
- negative regulation of type I interferon production
- positive regulation of interferon-gamma-mediated signaling pathway
- positive regulation of MHC class I biosynthetic process
- positive regulation of transcription by RNA polymerase II
- regulation of kinase activity
- immune system process
- innate immune response
- negative regulation of NF-kappaB transcription factor activity
- negative regulation of type I interferon-mediated signaling pathway
- response to bacterium
- intracellular signal transduction
| Sources:Amigo / QuickGO |
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Wikidata |
View/Edit Human | View/Edit Mouse |
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NLRC5, short for NOD-like receptor family CARD domain containing 5, is an intracellular protein that plays a role in the immune system. NLRC5 is a pattern recognition receptor implicated in innate immunity to viruses potentially by regulating interferon activity.[5][6][7]
Recently, NLRC5 has been suggested to play a positive role in the regulation of Major Histocompatibility Class I (MHCI) molecule expression.[8] This aspect of NLRC5 function was further investigated with the help of Nlrc5-deficient mice, which showed reduced MHCI expression in lymphocytes (particularly T, NK and NKT lymphocytes).[9] In lymphocytes, NLRC5 localizes to the nucleus and drives MHCI gene expression by occupying H-2D and H-2K gene promoters.[9]
In humans, the NLRC5 protein is encoded by the NLRC5 gene.[10] It has also been called NOD27, NOD4, and CLR16.1.
References
- ^ a b c GRCh38: Ensembl release 89: ENSG00000140853 – Ensembl, May 2017
- ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000074151 – Ensembl, May 2017
- ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
- ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
- ^ Neerincx A, Lautz K, Menning M, et al. (June 2010). "A Role for the Human Nucleotide-binding Domain, Leucine-rich Repeat-containing Family Member NLRC5 in Antiviral Responses". J Biol Chem. 285 (34): 26223–32. doi:10.1074/jbc.M110.109736. PMC 2924034. PMID 20538593.
- ^ Cui J, Zhu L, Xia X, et al. (April 2010). "NLRC5 negatively regulates the NF-κB and type I interferon signaling pathways and antiviral immunity". Cell. 141 (3): 483–96. doi:10.1016/j.cell.2010.03.040. PMC 3150216. PMID 20434986.
- ^ Kuenzel S, Till A, Winkler M, et al. (February 2010). "The nucleotide-binding oligomerization domain-like receptor NLRC5 is involved in IFN-dependent antiviral immune responses". J. Immunol. 184 (4): 1990–2000. doi:10.4049/jimmunol.0900557. PMID 20061403.
- ^ Meissner, TB; Li, A; Biswas, A; Lee, K; Liu, Y; Bayir, E; Iliopoulos, D; van den Elsen, PJ; Kobayashi, KS (August 2010). "NLR family member NLRC5 is a transcriptional regulator of MHC class I genes". Proc. Natl. Acad. Sci. 107 (31): 13794–13799. Bibcode:2010PNAS..10713794M. doi:10.1073/pnas.1008684107. PMC 2922274. PMID 20639463.
- ^ a b Staehli, F; Ludigs, K; Heinz, LX; Seguín-Estévez, Q; Ferrero, I; Braun, M; Schroder, K; Rebsamen, M; Tardivel, A; Mattmann, C; MacDonald, HR; Romero, P; Reith, W; Guarda, G; Tschopp, J (April 2012). "NLRC5 Deficiency Selectively Impairs MHC Class I-Dependent Lymphocyte Killing by Cytotoxic T Cells". J Immunol. 188 (8): 3820–8. doi:10.4049/jimmunol.1102671. PMID 22412192. Retrieved 23 March 2012.
- ^ Dowds TA, Masumoto J, Chen FF, Ogura Y, Inohara N, Núñez G (March 2003). "Regulation of cryopyrin/Pypaf1 signaling by pyrin, the familial Mediterranean fever gene product". Biochem. Biophys. Res. Commun. 302 (3): 575–80. doi:10.1016/S0006-291X(03)00221-3. PMID 12615073.