Caldanaerobacter

Genus of bacteria

Caldanaerobacter
Scientific classification
Domain:	Bacteria
Phylum:	Bacillota
Class:	Clostridia
Order:	Thermoanaerobacterales
Family:	Thermoanaerobacteraceae
Genus:	Caldanaerobacter Fardeau et al. 2004^[1]
Type species
Caldanaerobacter subterraneus (Fardeau et al. 2000) Fardeau et al. 2004
Species
"C. hydrothermalis"^[2] "C. proteolyticus"^[3] C. subterraneus C. uzonensis
Synonyms
Carboxydibrachium corrig. Sokolova et al. 2001^[4] Carboxydobrachium (sic)

Caldanaerobacter is a Gram-positive or negative and strictly anaerobic genus of bacteria from the family of Thermoanaerobacteraceae.^[4]^[5]^[6]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)^[1] and National Center for Biotechnology Information (NCBI)^[7]

16S rRNA based LTP_01_2022^[8]^[9]^[10]

C. subterraneus subterraneus (Fardeau et al. 2000) Fardeau et al. 2004

C. subterraneus yonseiensis (Kim et al. 2001) Fardeau et al. 2004

C. subterraneus tengcongensis (Xue et al. 2001) Fardeau et al. 2004

	C. subterraneus pacificus (Sokolova et al. 2001) Fardeau et al. 2004

	C. uzonensis Kozina et al. 2010

References

^ ^a ^b J.P. Euzéby. "Caldanaerobacter". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022-09-09.
^ "Caldanaerobacter hydrothermalis". www.uniprot.org.
^ "Caldanaerobacter proteolyticus". www.uniprot.org.
^ ^a ^b "Caldanaerobacter". www.uniprot.org.
^ Parker, Charles Thomas; Osier, Nicole Danielle; Garrity, George M; Taylor, Dorothea (2009). Parker, Charles Thomas; Garrity, George M. (eds.). "Nomenclature Abstract for Caldanaerobacter". The NamesforLife Abstracts. doi:10.1601/nm.4521 (inactive 2024-04-17).{{cite journal}}: CS1 maint: DOI inactive as of April 2024 (link)
^ Fardeau, Marie-Laure; Ollivier, Bernard; Cayol, Jean-luc (2015). "Caldanaerobacter". Bergey's Manual of Systematics of Archaea and Bacteria. John Wiley & Sons, Ltd: 1–5. doi:10.1002/9781118960608.gbm00745. ISBN 9781118960608.
^ Sayers; et al. "Caldanaerobacter". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-09-09.
^ "The LTP". Retrieved 23 February 2022.
^ "LTP_all tree in newick format". Archived from the original on 4 September 2022. Retrieved 23 February 2022.
^ "LTP_01_2022 Release Notes" (PDF). Retrieved 23 February 2022.

Fardeau, ML; Bonilla Salinas, M; L'Haridon, S; Jeanthon, C; Verhé, F; Cayol, JL; Patel, BK; Garcia, JL; Ollivier, B (March 2004). "Isolation from oil reservoirs of novel thermophilic anaerobes phylogenetically related to Thermoanaerobacter subterraneus: reassignment of T. subterraneus, Thermoanaerobacter yonseiensis, Thermoanaerobacter tengcongensis and Carboxydibrachium pacificum to Caldanaerobacter subterraneus gen. nov., sp. nov., comb. nov. as four novel subspecies". International Journal of Systematic and Evolutionary Microbiology. 54 (Pt 2): 467–74. doi:10.1099/ijs.0.02711-0. PMID 15023962.
Kozina, IV; Kublanov, IV; Kolganova, TV; Chernyh, NA; Bonch-Osmolovskaya, EA (June 2010). "Caldanaerobacter uzonensis sp. nov., an anaerobic, thermophilic, heterotrophic bacterium isolated from a hot spring" (PDF). International Journal of Systematic and Evolutionary Microbiology. 60 (Pt 6): 1372–1375. doi:10.1099/ijs.0.012328-0. PMID 19671728. S2CID 206168130. Archived from the original (PDF) on 2019-02-23.

Prokaryotes: Bacteria classification

Domain

Archaea

Bacteria

Eukaryota

(major groups

Excavata

Diaphoretickes

Hacrobia

Rhizaria

Alveolata

Stramenopiles

Plants

Amorphea

Amoebozoa

Opisthokonta

Animals

Fungi)

Terrabacteria
BV1, BV3, BV5

others	Actinomycetota Acidimicrobiia Actinomycetia "Aquicultoria" Coriobacteriia "Geothermincolia" "Humimicrobiia" Rubrobacteria Thermoleophilia "Bipolaricaulota" "Bipolaricaulia" Chloroflexota "Caldilineia" Chloroflexia Dehalococcoidia Ktedonobacteria "Limnocylindria" Deinococcota "Deinococcia" "Dormiibacterota" "Dormibacteria" Armatimonadota "Abditibacteriia" Armatimonadia Chthonomonadia Fimbriimonadia "Heboniibacteriia" "Zipacnadia" "Eremiobacterota" "Eudoremicrobiia" "Xenobiia" "Eremiobacteria"
Cyanoprokaryota	Cyanobacteriota Cyanobacteria "Sericytochromatia" "Vampirovibrionophyceae" "Margulisiibacteriota" "Marinamargulisbacteria" "Riflemargulisbacteria" "Saganbacteria" "Termititenacia"
Firmicutes BV3 Low GC	Bacillota "Bacillia" Bacillota A "Clostridiia" "Thermoanaerobacteria" "Thermosediminibacteria" Bacillota D "Dethiobacteria" "Natranaerobiia" "Proteinivoracia" Bacillota E "Sulfobacillia" "Symbiobacteriia" "Thermaerobacteria" Bacillota G "Hydrogenisporia" Limnochordia "Desulfotomaculota" "Carboxydocellia" "Carboxydothermia" "Dehalobacteriia" "Desulfitobacteriia" "Desulfotomaculia" "Moorellia" "Peptococcia" "Syntrophomonadia" "Thermincolia" "Halanaerobiaeota" "Halanaerobiia" "Selenobacteria" "Selenomonadia"

CPR group

"Elulota"
- "Elulimicrobia"
"Patescibacteria"
- ABY1
- "Absconditabacteria"
- "Andersenbacteria"
- "Berkelbacteria"
- "Dojkabacteria"
- "Doudnabacteria"
- "Gracilibacteria"
- "Howlettbacteria"
- "Katanobacteria"
- "Kazanbacteria"
- "Microgenomatia"
- "Paceibacteria"
- "Saccharimonadia"
- "Torokbacteria"
- "Wirthbacteria"

Thermotogida

Synergistetes	Atribacterota Atribacteria Synergistota Synergistia
Thermocalda	Caldisericota Caldisericia Coprothermobacterota Coprothermobacteria Dictyoglomerota Dictyoglomeria "Lithacetigenota" "Lithacetigenia" "Thermodesulfobiota" "Thermodesulfobiia" Thermotogota "Thermotogia"

Fusobacterida

Fusobacteriota
- Fusobacteriia
"Macinerneyibacteriota"
- "Macinerneyibacteriia"
"Muiribacteriota"
- "Muiribacteriia"
"Rifleibacteriota"
- "Ozemibacteria"
"Walliibacteriota"

Hydrobacteria
BV2, BV4

Clade 1

"Aerophobota"
- "Aerophobia"
"Auribacterota"
- "Ancaeobacteria"
- "Auribacteria"
- "Erginobacteria"
- "Tritonobacteria"
"Desantisiibacteriota"
Elusimicrobiota
- Elusimicrobiia
- Endomicrobiia
"Firestoneibacteriota"
"Goldiibacteriota"
"Omnitrophota"
- "Omnitrophia"
- "Velamenicoccia"
"Ratteibacteriota"

Clade 2

"Abyssubacteria"
"Hinthialibacterota"
- "Hinthialibacteria"
"Hydrogenedentota"
- "Hydrogenedentia"
"Poribacteriota"
"Saltatorellota"
- "Saltatorellae"
"Sumerlaeota"
- "Sumerlaeia"

Spirochaeto
bacteriobiontes

"Babelota"
- "Babeliae"
"Lindowiibacteriota"
Spirochaetota
- "Brevinematia"
- "Brachyspirae"
- "Exilispiria"
- "Leptospiria"
- "Spirochaetia"

PVC group
(Planctobacteria)

Chlamydiota
- Chlamydiia
Planctomycetota
- "Brocadiia"
- Phycisphaeria
- Planctomycetia
- "Uabimicrobiia"
Verrucomicrobiota
- Kiritimatiellia
- Lentisphaeria
- Verrucomicrobiia

FCB group
(Sphingobacteria)

Bacteroidota
- Bacteroidia
- Chlorobiia
- "Ignavibacteriia"
- "Kapabacteria"
- "Kryptoniia"
- Rhodothermia
Calditrichota
- Calditrichia
"Cloacimonadota"
- "Cloacimonadia"
"Coatesiibacteriota"
"Cosmopoliota"
- "Cosmopolitia"
"Delongiibacteriota"
"Edwardsiibacteriota"
"Eiseniibacteriota"
"Electryoneota"
- "Electryoneia"
- "Tariuqbacteria"
"Fermentibacterota"
- "Fermentibacteria"
Fibrobacterota
- Chitinivibrionia
- Fibrobacteria
- "Raymondbacteriia"
Gemmatimonadota
- Gemmatimonadia
- "Glassbacteria"
"Heilongiota"
- "Heilongiia"
"Hydrothermota"
- "Hydrothermia"
- "Stahlbacteria"
"Krumholzibacteriota"
- "Krumholzibacteriia"
"Latescibacterota"
- "Handelsmanbacteria"
- "Latescibacteria"
"Neomarinimicrobiota"
"Marinisomatota"
- "Marinisomatia"
"Tianyaibacteriota"
"Zixiibacteriota"

Proteobacteria
BV2

Aquificida	"Acidulodesulfobacteriota" "Acidulodesulfobacteriia" Aquificota Aquificia "Desulfurobacteriia" Campylobacterota "Campylobacteria" Desulfurellia "Calescibacteriota" "Calescibacteriia" Chrysiogenota Chrysiogenia "Dadaibacteriota" "Dadabacteria" Deferribacterota "Deferribacteria" Desulfobacterota G Syntrophorhabdia "Thermosulfidibacterota" "Thermosulfidibacteria"
Deltaproteobacteria	Bdellovibrionota Bacteriovoracia Bdellovibrionia Oligoflexia "Binatota" "Binatia" "Deferrimicrobiota" "Anaeroferrophilia" "Deferrimicrobiia" "Deferrisomatota" Deferrisomatia "Desulfuromonadota" Desulfuromonadia "Lernaellota" "Lernaellia" "Methylomirabilota" "Methylomirabilia" "Moduliflexota" "Moduliflexia" Myxococcota Myxococcia "Bradymonadia" Polyangiia Nitrospinota Nitrospinia Nitrospirota Nitrospiria "Thermodesulfovibrionia" SAR324 "Lambdaproteobacteria" "Schekmaniibacteriota" "Tectimicrobiota" "Entotheonellia" "Thermodesulfobacteriota"
others	Acidobacteriota "Acidobacteriia" "Aminicenantia" Blastocatellia "Fischerbacteria" "Guanabaribacteriia" "Holophagia" "Polarisedimenticolia" Thermoanaerobaculia Vicinamibacteria "Canglongiota" "Canglongiia" "Leptospirillaeota" "Leptospirillia" Pseudomonadota "Caulobacteria" "Mariprofundia" "Magnetococcia" "Pseudomonadia"

others

"Qinglongiota"
- "Qinglongiia"
"Salinosulfoleibacteria"
"Teskebacteria"

Source: Bergey's Manual (2001–2012)
Alternative views: Wikispecies

Taxon identifiers
Caldanaerobacter	Wikidata: Q3650533 Wikispecies: Caldanaerobacter CoL: 3F4L EoL: 83569 GBIF: 3226946 IRMNG: 1102222 ITIS: 956877 LPSN: caldanaerobacter.html NCBI: 249529 Open Tree of Life: 688202 WoRMS: 571044